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Commit c50131db authored by Amandine PERRIN's avatar Amandine PERRIN
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Fix functional tests for annotate module

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PanACoTA/subcommands/annotate.py
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...@@ -408,8 +408,7 @@ def main(cmd, list_file, db_path, res_dir, name, date, l90=100, nbcont=999, cutn ...@@ -408,8 +408,7 @@ def main(cmd, list_file, db_path, res_dir, name, date, l90=100, nbcont=999, cutn
skipped_format = [] skipped_format = []
# Generate database (folders Proteins, Genes, Replicons, LSTINFO) # Generate database (folders Proteins, Genes, Replicons, LSTINFO)
skipped_format = ffunc.format_genomes(results_ok, res_dir, res_annot_dir, skipped_format = ffunc.format_genomes(results_ok, res_dir, res_annot_dir,
prodigal_only, threads, quiet=quiet, prodigal_only, threads, quiet=quiet)
changed_name=changed)
print(skipped_format) print(skipped_format)
# At least one genome could not be formatted -> warn user # At least one genome could not be formatted -> warn user
if skipped_format: if skipped_format:
......
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