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Commit d2b737df authored by Amandine  PERRIN's avatar Amandine PERRIN
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barrnap not installed in test image

parent 52ac2a6b
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...@@ -92,7 +92,7 @@ def test_upgrade(install_panacota): ...@@ -92,7 +92,7 @@ def test_upgrade(install_panacota):
""" """
Test upgrading PanACoTA when dependencies are still installed Test upgrading PanACoTA when dependencies are still installed
""" """
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
...@@ -100,7 +100,7 @@ def test_upgrade(install_panacota): ...@@ -100,7 +100,7 @@ def test_upgrade(install_panacota):
cmd = "python3 make upgrade" cmd = "python3 make upgrade"
error = "Error upgrade" error = "Error upgrade"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
...@@ -121,14 +121,14 @@ def test_upgrade_notinstalled(): ...@@ -121,14 +121,14 @@ def test_upgrade_notinstalled():
cmd = "python3 make uninstall" cmd = "python3 make uninstall"
error = "Error trying to uninstall PanACoTa" error = "Error trying to uninstall PanACoTa"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
assert not utils.check_installed("PanACoTA") assert not utils.check_installed("PanACoTA")
cmd = "python3 make upgrade" cmd = "python3 make upgrade"
error = "Error upgrade" error = "Error upgrade"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
...@@ -146,7 +146,7 @@ def test_uninstall(install_panacota): ...@@ -146,7 +146,7 @@ def test_uninstall(install_panacota):
""" """
Test uninstalling PanACoTA when dependencies are still installed Test uninstalling PanACoTA when dependencies are still installed
""" """
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
...@@ -154,7 +154,7 @@ def test_uninstall(install_panacota): ...@@ -154,7 +154,7 @@ def test_uninstall(install_panacota):
error = "Error uninstalling" error = "Error uninstalling"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA") assert not utils.check_installed("PanACoTA")
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("mash") assert utils.check_installed("mash")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
...@@ -177,12 +177,12 @@ def test_develop(): ...@@ -177,12 +177,12 @@ def test_develop():
error = "Error trying to uninstall PanACoTa" error = "Error trying to uninstall PanACoTa"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA") assert not utils.check_installed("PanACoTA")
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
cmd = "python3 make develop" cmd = "python3 make develop"
error = "Error develop" error = "Error develop"
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
# Check installed in developper mode (egg-info file is present) # Check installed in developper mode (egg-info file is present)
...@@ -226,12 +226,12 @@ def test_install_user(): ...@@ -226,12 +226,12 @@ def test_install_user():
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
cmd = "python3 make --user" cmd = "python3 make --user"
error = "Error trying to install PanACoTA from base" error = "Error trying to install PanACoTA from base"
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert not utils.check_installed("PanACoTA") assert not utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
utils.run_cmd(cmd, error) utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap") # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka") assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA") assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP") assert utils.check_installed("FastTreeMP")
......
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