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Commit e501ff54 authored by Blaise Li's avatar Blaise Li
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Update mentions of genome preparation workflow. 

Also made the genome preparation repository a submodule.
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.gitmodules
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...@@ -34,3 +34,6 @@ ...@@ -34,3 +34,6 @@
path = bam25prime path = bam25prime
url = https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git url = https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git
update = merge update = merge
[submodule "genome_preparation"]
path = genome_preparation
url = git@gitlab.pasteur.fr:bli/genome_preparation.git
README.md
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...@@ -95,7 +95,7 @@ same way as described in the previous section. ...@@ -95,7 +95,7 @@ same way as described in the previous section.
### Genome preparation ### Genome preparation
A genome preparation workflow is available at A genome preparation workflow is available at
<https://gitlab.pasteur.fr/bli/10825_Cecere/-/tree/master/Genomes> <https://gitlab.pasteur.fr/bli/genome_preparation>
This workflow will download genomic data from Illumina's iGenomes repository as This workflow will download genomic data from Illumina's iGenomes repository as
well as data regarding repeated elements directly from UCSC. well as data regarding repeated elements directly from UCSC.
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genome_preparation @ ad8d2cd7
Subproject commit ad8d2cd7ce865ccc5ce4ee8a8d35813d7de702cc
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