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Blaise LI
bioinfo_utils
Commits
f3ba3c72
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Commit
f3ba3c72
authored
2 years ago
by
Blaise Li
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Caught one more exception.
Could happen with columns containing only zero counts.
parent
61f0729b
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RNA_Seq_Cecere/RNA-seq.snakefile
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View file @
f3ba3c72
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@@ -42,4 +42,4 @@
url = git@gitlab.pasteur.fr:bli/gtf2attr.git
[submodule "libbamutils"]
path = libbamutils
url =
https://
gitlab.pasteur.fr
/
bli/libbamutils.git
url =
git@
gitlab.pasteur.fr
:
bli/libbamutils.git
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RNA_Seq_Cecere/RNA-seq.snakefile
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f3ba3c72
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@@ -1678,6 +1678,11 @@ rule test_size_factor:
"Got ValueError:", f"{str(e)}",
f"Data cannot be plotted for {normalizer}",
f"{data}\n"]))
elif str(e) == "array must not contain infs or NaNs":
warn("\n".join([
"Got ValueError:", f"{str(e)}",
f"Data cannot be plotted for {normalizer}",
f"{data}\n"]))
else:
raise
# xlabel = "log10(normalized counts)"
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