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Commit f3ba3c72 authored by Blaise Li's avatar Blaise Li
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Caught one more exception.

Could happen with columns containing only zero counts.
parent 61f0729b
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...@@ -42,4 +42,4 @@ ...@@ -42,4 +42,4 @@
url = git@gitlab.pasteur.fr:bli/gtf2attr.git url = git@gitlab.pasteur.fr:bli/gtf2attr.git
[submodule "libbamutils"] [submodule "libbamutils"]
path = libbamutils path = libbamutils
url = https://gitlab.pasteur.fr/bli/libbamutils.git url = git@gitlab.pasteur.fr:bli/libbamutils.git
...@@ -1678,6 +1678,11 @@ rule test_size_factor: ...@@ -1678,6 +1678,11 @@ rule test_size_factor:
"Got ValueError:", f"{str(e)}", "Got ValueError:", f"{str(e)}",
f"Data cannot be plotted for {normalizer}", f"Data cannot be plotted for {normalizer}",
f"{data}\n"])) f"{data}\n"]))
elif str(e) == "array must not contain infs or NaNs":
warn("\n".join([
"Got ValueError:", f"{str(e)}",
f"Data cannot be plotted for {normalizer}",
f"{data}\n"]))
else: else:
raise raise
# xlabel = "log10(normalized counts)" # xlabel = "log10(normalized counts)"
......
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