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David BIKARD
badSeed_public
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da655dd3
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da655dd3
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6 years ago
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David Bikard
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da655dd3
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@@ -10,9 +10,8 @@ contains an average of 19 targets per gene. A pool of guide RNAs obtained throug
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@@ -10,9 +10,8 @@ contains an average of 19 targets per gene. A pool of guide RNAs obtained throug
oligo synthesis was cloned under the control of a constitutive promoter on plasmid psgRNA
oligo synthesis was cloned under the control of a constitutive promoter on plasmid psgRNA
and electroporated in strain LC-E18 carrying the dCas9 gene under the control of a Ptet
and electroporated in strain LC-E18 carrying the dCas9 gene under the control of a Ptet
promoter in the chromosome. The pooled library of cells was then grown in rich medium
promoter in the chromosome. The pooled library of cells was then grown in rich medium
over 17 generations with anhydrotetracycline (aTc). The effect of each guide on the cell fitness can be measured as
over 17 generations with anhydrotetracycline (aTc). The fold change in abundance (log2FC) of the guide RNA
the fold change in abundance (log2FC) of the guide RNA in the library
was measured through deep sequencing of the library.
during the course of the experiment, as measured through deep sequencing of the library.
The log2FC data for all guides in the screen can be found in the file screen_data.csv
The log2FC data for all guides in the screen can be found in the file screen_data.csv
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