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David BIKARD
CRISPRbact
Commits
90bf01f9
Commit
90bf01f9
authored
5 years ago
by
Remi PLANEL
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Remove longest_perfect_match_length from dataframe
parent
5964446a
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Pipeline
#26167
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in 48 seconds
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1 changed file
crisprbact/predict.py
+4
-5
4 additions, 5 deletions
crisprbact/predict.py
with
4 additions
and
5 deletions
crisprbact/predict.py
+
4
−
5
View file @
90bf01f9
...
...
@@ -95,8 +95,7 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
"
pampos
"
,
"
strand
"
,
"
recid
"
,
"
max_matching_len
"
,
"
max_matching_seq
"
,
"
longest_perfect_match
"
,
"
pam_seq
"
,
"
features
"
,
],
...
...
@@ -113,11 +112,11 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
"
off_target_pampos
"
:
off_t
[
2
],
"
off_target_strand
"
:
off_t
[
3
],
"
off_target_recid
"
:
off_t
[
4
],
"
off_target_longest_perfect_match
"
:
off_t
[
6
],
"
off_target_pam_seq
"
:
off_t
[
7
],
"
off_target_longest_perfect_match
"
:
off_t
[
5
],
"
off_target_pam_seq
"
:
off_t
[
6
],
"
off_target_good_orientation
"
:
None
,
}
index_features
=
8
index_features
=
7
# Loop through features associated to an off-target position
if
len
(
off_t
[
index_features
])
>
0
:
# Loop for each feature
...
...
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