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This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

Inferring alien oligonucleotides (adapter, primer, index, barcode, ...) without any prior or external knowledge

This project serves as a repository for the code necessary for Pinon et al. 2025 paper.

scientific python course given in 2021

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.