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The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Fast Fourier Transform Plugin for Icy

Educational demo of design patterns which are useful for algorithmics

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

Multiple Sequence Alignment shrinking

Export sequences from Icy to Matlab *.mat files

Embed CPython in Java through JNI

Track Motion Profiler plugin for Icy. This plugin adds Motion Profiler and Motion Filter processors to Track Manager.

Creating an AGP file from a FASTA-formatted scaffold sequence file

Clipper - A polygon clipping library

This project contains icy utilitary var classes to help protocol creation.