Explore projects
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GIPhy / REQ
GNU Affero General Public License v3.0Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances
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Bioimage Analysis / Webcam Capture Example
GNU General Public License v3.0 onlyUpdated -
Thomas MENARD / springboot-maven3-centos
Apache License 2.0Updated -
Bioimage Analysis / Matlab IO
GNU General Public License v3.0 onlyLow-level library for reading and writing Matlab .mat files
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Bioimage Analysis / Matlab X Server
GNU General Public License v3.0 onlyUse Icy as an image viewer from Matlab
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Bioimage Analysis / ROI intensity evolution
GNU General Public License v3.0 onlyCompute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.
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IAH public / TrackingPerformance
BSD 3-Clause "New" or "Revised" LicenseTools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
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Bioimage Analysis / Javadoc Parser
GNU General Public License v3.0 onlyA tool to parse the javadoc of a file. Mostly used now by the Script Editor.
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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Bioimage Analysis / ROI Pool
GNU General Public License v3.0 onlyManage a list of ROIs that the user can store and pop back in one click.
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Bioimage Analysis / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
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Bioimage Analysis / Icy Median Filter
GNU General Public License v3.0 onlyIcy plugin for applying median filter on 2D and 3D sequences
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Bioimage Analysis / Matlab Importer
GNU General Public License v3.0 onlyImport Matlab *.mat files as sequences in Icy
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Bioimage Analysis / Texture segmentation
GNU General Public License v3.0 onlyIt is a toy plugin to test semi-supervised texture segmentation using the new SLBPriu texture descriptor.
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Bioimage Analysis / Rigid Registration
GNU General Public License v3.0 onlyA simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.
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Bioimage Analysis / FFT
GNU General Public License v3.0 onlyFast Fourier Transform Plugin for Icy
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