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Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances

Low-level library for reading and writing Matlab .mat files

imglib2-icy ImgLib2 wrappers for Icy.

Use Icy as an image viewer from Matlab

Compute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

A tool to parse the javadoc of a file. Mostly used now by the Script Editor.

Creating an AGP file from a FASTA-formatted scaffold sequence file

Icy wrapper for the Apache Commons CSV library.

Manage a list of ROIs that the user can store and pop back in one click.

Display the colormap over the image using an overlay.

Icy plugin for applying median filter on 2D and 3D sequences

Import Matlab *.mat files as sequences in Icy

It is a toy plugin to test semi-supervised texture segmentation using the new SLBPriu texture descriptor.

A simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.

Fast Fourier Transform Plugin for Icy