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Java3D library for Icy

Jama Matrix Package library for Icy

coverage profile from read alignments

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

MetroloSPIM plugin for Icy

This project contains icy utilitary var classes to help protocol creation.

The Java Native Access (JNA) library for Icy

https://github.com/java-native-access/jna

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

My own toolbox used for all the plugins I developed.

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning

Blocks (Protocols) for Micro-Manager plugin

This project is dedicated to protocol blocks generating random objects:

doubles integers subimages