Explore projects

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Helm 3 charts to deploy a Supabase on Kubernetes

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).

MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.

ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).

Export sequences from Icy to Matlab *.mat files

Codes and Data for the paper “SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021”.

creating figures showing overall similarity between genomes

Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly

metagenomics pipeline on maestro

PySLM is a multi channel Sound Level Meter software developed in python with a PyQt5 graphical interface

Defining small RNAs in C. elegans.