Compute RNA expression around a reference position
The snakeyaml library available for Icy
Evolutionary Contact wrapper for ARIA software
This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15
Unix training, from total beginners to advanced users
Deprojection of a 2D segmentation onto a 2.5D mesh
script that makes a visual representation of a spot containing ICE.
MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.
Find characters shared by a group of aligned sequences
Bio-Formats library patched for Icy.
The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
Some scripts to plot results from my HTS pipelines.
Template to create new Icy plugin (POM file and base plugin class)
Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
A web interface for the Joint Analysis of GWAS Summary Statistics.
Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences.