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Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

EzPlug plugin for Icy

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

Protocols (GUI part) plugin for Icy

Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).

Spot Tracking plugin for Icy

Track Manager plugin for Icy

ROI Statistics plugin for Icy

Compute RNA expression around a reference position

Tools to design and analyse CRISPRi experiments

The snakeyaml library available for Icy

Evolutionary Contact wrapper for ARIA software

This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15

Unix training, from total beginners to advanced users

Deprojection of a 2D segmentation onto a 2.5D mesh

script that makes a visual representation of a spot containing ICE.

MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.