Explore projects

pipeline nextflow

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

assessing GAD-related GABA biosynthesis from unannotated genome sequences

MetroloSPIM plugin for Icy

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.

Shiny version of coGSEA

coGSEA

Public copy of gitlab.pasteur.fr/les-larves/maggotuba#light-stable-for-tagging Courtesy of A. Blanc

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

ROI Inclusion Analysis plugin for Icy.

Block Mapping and Gathering with Entropy

Simulation study to determine the impact of summary statistic imputation on a meta-analysis