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No code here, only artefacts, mostly to feed the CI with data

This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)

imglib2-icy ImgLib2 wrappers for Icy.

Sources for the server running at http://hub05.hosting.pasteur.fr/NMD_complexes/ Allows exploration of interactions around NMD complexes (Dehecq et al., EMBOJ 2018)

Images docker openshift ready

Distance Transforms Plugin for Icy

Utilities to cluster sequences.

Miscellaneous stuff to deal with Ribo-seq data.

Singularity(based on docker://debian) container to run skype