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Minimum Spanning Tree-based clustering

Translating and back-translating codon and amino-acid sequence files

Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances

Spot Tracking plugin for Icy

Spot detector plugin for Icy

Provides 3D vector mathematics classes.

Create a list of tag and apply them to ROIs.

Manage a list of ROIs that the user can store and pop back in one click.

A open-source utility library for linear programming in Java with the simplex algorithm.

Track Manager plugin for Icy

Script Editor plugin for Icy

This Icy plugin allows to compute and display the histogram of a sequence, with a more accurate control on the histogram parameters. It also enables the computation of histograms on ROIs.

Icy wrapper for the Apache Commons CSV library.