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A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

Collection of R scripts and pipelines for the PvSTATEM project.

Git repository to host The PvSeroTAT RShiny app. This app provides a user-friendly interface to apply classification algorithms to detect recent infections by Plasmodium vivax, as detailed in the recent paper by Longley et al. (https://doi.org/10.1038/s41591-020-0841-4)

Individual-based model of P. vivax transmission

Sources for the server running at http://hub05.hosting.pasteur.fr/NMD_complexes/ Allows exploration of interactions around NMD complexes (Dehecq et al., EMBOJ 2018)

Code repository for the paper "An algorithm to build synthetic temporal contact networks based on close-proximity interactions data"

Repository containing scripts and data for the paper "Hozé et al., Lancet Public Health, Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study"

MeRIP-Seq pipeline analysis for m6a methylation site detection Author: Christophe Bécavin, Hub Bioinformatic and Biostatistic, Institut Pasteur