Explore projects

EzPlug plugin for Icy

Fast removal of contaminating reads from FASTQ file(s)

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

Local z-projection via the determination of a plane of reference.

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

Cropping reads to reach homogeneous composition among positions

MetroloSPIM plugin for Icy

My own toolbox used for all the plugins I developed.

Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning