Explore projects
-
-
Bioimage Analysis / Matlab Importer
GNU General Public License v3.0 onlyImport Matlab *.mat files as sequences in Icy
Updated -
Bioimage Analysis / Workspace Editor
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Matlab IO
GNU General Public License v3.0 onlyLow-level library for reading and writing Matlab .mat files
Updated -
Bioimage Analysis / Label Extractor
GNU General Public License v3.0 onlyExtracts labeled objects from a binary or labeled image into ROI using connected component analysis
Updated -
Bioimage Analysis / Isotropic Wavelet
GNU General Public License v3.0 onlyUpdated -
IAH public / CellContactAnalyzer
GNU General Public License v3.0 onlyA Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
Updated -
Bioimage Analysis / Matlab X Server
GNU General Public License v3.0 onlyUse Icy as an image viewer from Matlab
Updated -
Bioimage Analysis / Soda Suite
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Filter Toolbox
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Intensity Profile
GNU General Public License v3.0 onlyA plugin allowing to create a graphic showing the intensity profile of 2D ROIs
Updated -
Bioimage Analysis / Mask Editor
GNU General Public License v3.0 onlyThis plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.
Updated -
Bioimage Analysis / Webcam Capture Example
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
Updated -
-
Bioimage Analysis / Micro-Manager for Icy
GNU General Public License v3.0 onlyMicro-Manager plugin for Icy
Updated -
Bioimage Analysis / Micro-Manager Blocks
GNU General Public License v3.0 onlyBlocks (Protocols) for Micro-Manager plugin
Updated -
Bioimage Analysis / Gson - deprecated
GNU General Public License v3.0 onlyGson library plugin for Icy
Updated -
Bioimage Analysis / Path Intensity Profile
GNU General Public License v3.0 onlyCompute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV
Updated -
Bioimage Analysis / ROI blocks
GNU General Public License v3.0 onlyROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).
Updated