Explore projects
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GIPhy / REQ
GNU Affero General Public License v3.0Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances
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Icy is an open community platform for bioimage informatics
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Bioimage Analysis / Rigid Registration
GNU General Public License v3.0 onlyA simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.
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GIPhy / LINtree
GNU Affero General Public License v3.0building prefix tree from LIN codes
Topics: javaUpdated -
GIPhy / BMGE
GNU Affero General Public License v3.0Block Mapping and Gathering with Entropy
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
PFCCB / Cytokinesis
GNU Affero General Public License v3.0This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.
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Bioimage Analysis / TensorFlow Manager
GNU General Public License v3.0 onlyThe TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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Bioimage Analysis / Soda Suite
GNU General Public License v3.0 onlyUpdated -
GIPhy / SAM2MSA
GNU Affero General Public License v3.0Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data
Topics: phylogeneticsUpdated -
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Bioimage Analysis / Spot Tracking
GNU General Public License v3.0 onlySpot Tracking plugin for Icy
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Bioimage Analysis / Vecmath
GNU General Public License v3.0 onlyProvides 3D vector mathematics classes.
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Bioimage Analysis / Plugin template
GNU General Public License v3.0 onlyTemplate to create new Icy plugin (POM file and base plugin class)
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Bioimage Analysis / Protocols
GNU General Public License v3.0 onlyProtocols (GUI part) plugin for Icy
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Bioimage Analysis / Microscope Remote
GNU General Public License v3.0 onlyUpdated