Explore projects

A web site for indeep

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)

nanopore de novo assembly

mini-contig de novo assembly from long-read data

Genome de novo assembly from raw paired-end FASTQ files

Preprocessing FASTQ files

Fast trimming of sequencing reads

Assembling SSU

Icy is an open community platform for bioimage informatics

Estimating standard descriptive statistics from contig sequences

This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

scientific python course given in 2021