Explore projects

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Downloading FASTQ files from ENA

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

Course material for the part about R and RStudio of the PhD course.

Downloading genome assembly files from GenBank or RefSeq

searching and extracting universal single-copy genes from PhyloM:bacteria

building forests of near-ML trees

Estimating standard descriptive statistics from FASTQ files

Fast greedy clustering of genomes based on minhash similarity

majority-rule consensus of ML phylogenetic trees