Explore projects

Downloading FASTQ files from ENA

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

Course material for the part about R and RStudio of the PhD course.

Downloading genome assembly files from GenBank or RefSeq

searching and extracting universal single-copy genes from PhyloM:bacteria

building forests of near-ML trees

Estimating standard descriptive statistics from FASTQ files

COG annotation of CDS

Fast greedy clustering of genomes based on minhash similarity

majority-rule consensus of ML phylogenetic trees

Computing the probability that a phylogenetic tree is the result of a Yule process