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Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV

A toolbox to chain image analysis processes

My own toolbox used for all the plugins I developed.

Track Motion Profiler plugin for Icy. This plugin adds Motion Profiler and Motion Filter processors to Track Manager.

Icy plugin for applying median filter on 2D and 3D sequences

Template to create new Icy plugin (POM file and base plugin class)

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols