Minimum Spanning Tree-based clustering

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances

Course material for the part about R and RStudio of the PhD course.

Django based project to build metagenomics genes catalog

Trying to deconvolve single tag assignment for multiple molecules

A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...

BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.

The impact of genetic diversity on gene essentiality within the E. coli species

General purpose image analysis filters in python

compress nd2 files

Downloading genome assembly files from GenBank or RefSeq