Explore projects
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A simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.
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Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data
Topics: phylogeneticsUpdated -
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Local z-projection via the determination of a plane of reference.
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A Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
Topics: trackingUpdated -
Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances
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Translating the maximum number of codons using the minimum number of ORFs
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Fast trimming of sequencing reads
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The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.
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Template to create new Icy plugin (POM file and base plugin class)
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