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Indexing of trx.mat files into SQLite DB

This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

mini-contig de novo assembly from long-read data

nanopore de novo assembly

FASTQ summary

Helm 3 charts to deploy a Supabase on Kubernetes

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

Computing the probability that a phylogenetic tree is the result of a Yule process

building forests of near-ML trees