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Genome de novo assembly from raw paired-end FASTQ files

searching and extracting universal single-copy genes from PhyloM:bacteria

building forests of near-ML trees

Preprocessing FASTQ files

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)

Estimating standard descriptive statistics from FASTQ files

COG annotation of CDS

Fast greedy clustering of genomes based on minhash similarity

Assembling SSU