GitLab

Repository containing scripts and data for the paper "Hozé et al., Lancet Public Health, Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study"

Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).

Django based project to build metagenomics genes catalog

A web-based collaborative LaTeX editor

Utilities to collapse reads in bam files to their 5' end

HUB transcriptomic snakemake pipeline

Temperature and Infection influence on Microbiote of TIger Mosquito /// (influence de) la Température et l'Infection sur le Microbiote du Moustique TIgre

Miscellaneous python things to deal with bam files

Fast removal of contaminating reads from FASTQ file(s)

Icy is an open community platform for bioimage informatics

Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV

Estimating standard descriptive statistics from FASTQ files

Compute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.