GitLab

Django based project to build metagenomics genes catalog

Docker for InterMine

compress nd2 files

Deprojection of a 2D segmentation onto a 2.5D mesh

Miscellaneous stuff to deal with Ribo-seq data.

Some wrappers for my snakemake HTS pipelines

Some helpers for HTS data analyses.

SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.

Fast distance-based phylogenetic inference from unaligned genome sequences

Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Course material for the part about R and RStudio of the PhD course.

Serratus project, read downloader using AWS Batch