Commit 1d6ffb17 authored by Gael  MILLOT's avatar Gael MILLOT
Browse files

v7.10.0 release: Pointing to the singularity folder improved, new option...

v7.10.0 release: Pointing to the singularity folder improved, new option slurm_local added better worflow report
parent e1eb78b6
......@@ -146,7 +146,7 @@ Then run:
```bash
# distant main.nf file
HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} -hub pasteur gmillot/14985_loot -r v7.8.0 -c $HOME/nextflow.config ; HOME="/pasteur/appa/homes/gmillot/"
HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} -hub pasteur gmillot/14985_loot -r v7.9.0 -c $HOME/nextflow.config ; HOME="/pasteur/appa/homes/gmillot/"
# local main.nf file ($HOME changed to allow the creation of .nextflow into /$ZEUSHOME/14985_loot/. See NFX_HOME in the nextflow soft script)
HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} main.nf ; HOME="/pasteur/appa/homes/gmillot/"
......@@ -209,6 +209,11 @@ Gitlab developers
## WHAT'S NEW IN
### v7.10.0
1) Pointing to the singularity folder improved, new option "slurm_local" added better worflow report
### v7.9.0
1) Pipeline improved
......
task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
2 e7/424ee9 183 Nremove (1) CACHED 0 2022-02-22 15:19:14.426 4.8s 1.7s 46.8% 12 MB 70.6 MB 16.8 MB 14.5 MB
4 5c/9949b3 1152 trim (1) CACHED 0 2022-02-22 15:19:19.373 12.3s 9.1s 42.9% 62.8 MB 5.6 GB 16.4 MB 12 MB
7 1c/07097b 2902 kraken (1) CACHED 0 2022-02-22 15:19:31.771 385ms 36ms 72.1% 0 0 150.8 KB 216 B
6 71/e822e1 1618 fivep_filtering (1) CACHED 0 2022-02-22 20:10:48.915 3s 1.6s 26.0% 9.6 MB 61.4 MB 28 MB 15.3 MB
5 01/01ac2e 2923 fastqc1 (1) CACHED 0 2022-02-22 15:19:31.867 20.3s 17.6s 76.6% 196.5 MB 3.1 GB 13.9 MB 1.2 MB
8 74/0a40f9 2495 cutoff (1) CACHED 0 2022-02-22 20:10:52.062 1.7s 632ms 19.5% 9.6 MB 61.3 MB 7 MB 3.9 MB
10 d0/cf0991 8593 plot_fivep_filtering_stat (1) CACHED 0 2022-02-22 15:21:47.464 16.9s 15s 63.1% 203.2 MB 2.4 GB 19.1 MB 816.6 KB
9 7a/397d42 4382 fastqc2 (1) CACHED 0 2022-02-22 20:27:19.170 6.3s 5s 61.3% 150.4 MB 3.1 GB 12.3 MB 1.2 MB
11 91/8872f7 10025 bowtie2 (1) CACHED 0 2022-02-22 20:40:59.028 4.2s 3.3s 58.6% 111.6 MB 239.5 MB 35 MB 16.2 MB
12 9d/ad802f 271 motif CACHED 0 2022-02-22 15:19:14.758 57.3s 54.4s 45.6% 235.2 MB 2.4 GB 48.3 MB 39.7 MB
13 e7/0f8ca5 8799 plot_read_length (1) CACHED 0 2022-02-22 20:40:42.125 16.9s 15.6s 67.1% 307.6 MB 2.5 GB 19.7 MB 717.5 KB
17 70/4547a0 10486 Q20 (1) CACHED 0 2022-02-22 20:41:03.310 1.6s 375ms 17.2% 5.8 MB 42.8 MB 3.2 MB 2.2 MB
16 75/97cb47 10460 coverage (1) CACHED 0 2022-02-22 20:41:03.292 2s 809ms 15.7% 5.1 MB 44.6 MB 479.7 KB 91 KB
18 94/21967c 10518 multiQC CACHED 0 2022-02-22 20:41:03.330 8.5s 8s 40.2% 70.9 MB 81.4 MB 28.3 MB 2.3 MB
21 9b/c9d978 10927 no_soft_clipping (1) CACHED 0 2022-02-22 20:41:04.907 1.5s 301ms 15.5% 3.4 MB 38.4 MB 2.1 MB 1.5 MB
22 78/6a3590 11762 plot_coverage (1) CACHED 0 2022-02-22 20:41:07.165 15.5s 14.7s 62.2% 203.7 MB 2.4 GB 19.1 MB 464.3 KB
19 10/b42e02 11096 coverage (2) CACHED 0 2022-02-22 20:41:05.307 1.8s 741ms 16.5% 5 MB 44.6 MB 335 KB 82.4 KB
20 47/ef2076 10991 duplicate_removal (1) CACHED 0 2022-02-22 20:41:04.940 2.9s 1.8s 25.5% 7.4 MB 53 MB 12.8 MB 6.6 MB
23 1a/4b7041 12101 insertion (1) CACHED 0 2022-02-22 20:41:08.884 1.4s 482ms 19.7% 9.1 MB 65.6 MB 2.5 MB 1.7 MB
25 2b/d2a26d 13051 plot_coverage (2) CACHED 0 2022-02-22 20:41:22.625 14.8s 14.1s 64.5% 206.5 MB 2.4 GB 19.1 MB 455.9 KB
24 5e/1ca0b8 13773 coverage (3) CACHED 0 2022-02-22 20:41:37.445 1.5s 578ms 19.7% 5.1 MB 44.6 MB 310.2 KB 82.1 KB
27 f6/edb675 13925 seq_around_insertion (1) CACHED 0 2022-02-22 20:41:38.925 6.3s 5.6s 72.5% 156.5 MB 2.3 GB 17.9 MB 229.4 KB
26 9e/6e5dd6 14430 final_insertion_files (1) CACHED 0 2022-02-22 20:41:45.265 6.5s 5.8s 72.1% 173.5 MB 2.3 GB 18 MB 266 KB
28 55/2b9806 14883 plot_coverage (3) CACHED 0 2022-02-22 20:41:51.764 15s 14.3s 63.9% 206.4 MB 2.4 GB 19.1 MB 459.1 KB
29 ef/0f9c22 15606 extract_seq (1) CACHED 0 2022-02-22 20:42:06.756 1.7s 840ms 19.6% 5.8 MB 50.2 MB 9.1 MB 4.5 MB
34 93/91ac2a 15899 base_freq (1) CACHED 0 2022-02-22 20:42:08.578 1.7s 91ms 13.5% 0 0 279.6 KB 16.8 KB
33 9e/88bce3 15833 base_freq (4) CACHED 0 2022-02-22 20:42:08.530 1.7s 102ms 11.5% 0 0 281.8 KB 19 KB
32 dd/d59b9f 15868 base_freq (3) CACHED 0 2022-02-22 20:42:08.560 1.4s 103ms 12.1% 0 0 282.4 KB 19.7 KB
31 82/5592cb 15942 base_freq (2) CACHED 0 2022-02-22 20:42:08.599 1.5s 97ms 11.6% 0 0 281.6 KB 18.9 KB
30 ef/14c394 15793 random_insertion (1) CACHED 0 2022-02-22 20:42:08.476 13.1s 12.1s 61.6% 384.1 MB 2.7 GB 30.7 MB 1.2 MB
37 cb/7fbfc4 17176 logo (1) CACHED 0 2022-02-22 20:42:21.604 9.6s 8.8s 61.0% 202.1 MB 2.4 GB 14.6 MB 873.7 KB
40 53/74fd55 19631 global_logo CACHED 0 2022-02-22 20:43:00.113 9.7s 9s 63.6% 203.3 MB 2.4 GB 14.6 MB 850.3 KB
36 f6/b96d60 18408 logo (3) CACHED 0 2022-02-22 20:42:40.654 9.6s 8.9s 61.1% 204.1 MB 2.4 GB 14.6 MB 882.6 KB
35 54/42a221 19019 logo (4) CACHED 0 2022-02-22 20:42:50.233 9.9s 9.2s 59.9% 206.5 MB 2.4 GB 14.6 MB 1002.2 KB
38 13/c75c72 17797 logo (2) CACHED 0 2022-02-22 20:42:31.183 9.5s 8.8s 61.4% 229.3 MB 2.4 GB 14.6 MB 852.9 KB
41 b7/0ba328 20250 plot_insertion (1) CACHED 0 2022-02-22 20:43:09.794 36.7s 36s 74.6% 998.8 MB 3.2 GB 40.3 MB 9.7 MB
1 d1/d3302b 21389 init COMPLETED 0 2022-02-22 20:44:27.767 1.8s 12ms 6.2% 0 0 104.1 KB 669 B
3 6a/b7ac99 21417 report1 COMPLETED 0 2022-02-22 20:44:27.812 1.9s 18ms 6.0% 0 0 104.5 KB 683 B
14 3f/736771 21506 backup COMPLETED 0 2022-02-22 20:44:27.976 1.8s 13ms 6.1% 0 0 104.3 KB 518 B
39 cb/a45b2e 21670 report2 COMPLETED 0 2022-02-22 20:44:28.329 1.5s 26ms 8.5% 0 0 130.8 KB 1.3 KB
15 8d/8cfbe1 21537 workflowVersion COMPLETED 0 2022-02-22 20:44:28.024 2s 637ms 12.5% 4.8 MB 38.4 MB 135 KB 1.7 KB
42 41/e917b4 22159 print_report (1) COMPLETED 0 2022-02-22 20:44:30.332 10.5s 9.7s 54.9% 243.9 MB 1 TB 31.2 MB 11.6 MB
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