release v8.8: README.md file updated and dataset folder cleaned

Precision about were the cutting is, relatively to the nucleotide position indicated in the files & logos improved for the reverse panels

release: Figure 21 and 44 modified.

release: Some figures corrected, computations of number of insertions also and the duplicated part is now ok

release v8.4.0: Same bug fixed elsewhere

release v8.3.0: Small bug removed: now same orientation plotted in the CDS plots

release v8.2.0: All the problems should be solved in this version

v8.1.0 release: Display improvement. But still problem when using the option -resume of nextflow run

Version v8.0.0: Operational version for Ecoli. But Warning: still problem when using the option -resume of nextflow run, notably including a wrong figure 38, because of all the code between processes in the mai
n.nf file that are not controled by the cache system

Pointing to the singularity folder improved, new option slurm_local added better worflow report

Pipeline improved

Pipeline improved

Kraken added and multiQC fixed

release: Everything's fine, except the multiQC

release: Ok up to the plot_insertion process, tested using the test file

release: Ok up to global logo, tested using the test file

release: flow and files improved by Fred, because of the relative paths, no need of dev/

release: better priority for slurm

release: dev/test.config adapted to slurm

release: Ok up to insertion freq, tested using the test file