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Commit 1b94433e authored by Gael's avatar Gael
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v18.0.0 release

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...@@ -199,10 +199,16 @@ Hub-CDB and Institut Pasteur ...@@ -199,10 +199,16 @@ Hub-CDB and Institut Pasteur
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## WHAT'S NEW IN ## WHAT'S NEW IN
### v18.0.0
1) S:K417N position added as critical because of https://www.reuters.com/business/healthcare-pharmaceuticals/what-is-delta-variant-coronavirus-with-k417n-mutation-2021-06-23/
### v17.0.0 ### v17.0.0
1) scan() improved to be adapted to any header of fasta file 1) scan() improved to be adapted to any header of fasta file
### v16.0.0 ### v16.0.0
1) New critical_pos.txt file format 1) New critical_pos.txt file format
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# GATK positions for the deletions # GATK positions for the deletions
chr begin_pos end_pos codon_ref orf name ini_concern_name chr begin_pos end_pos codon_ref orf name ini_concern_name
MN908947_Ampliseq 21563 21565 ACA S S:T19 S:T19R MN908947_Ampliseq 21563 21565 ACA S S:T19 S:T19R
MN908947_Ampliseq 22757 22759 AAG S S:K417 S:K417N
MN908947_Ampliseq 22826 22828 AAT S S:N440 S:N440K MN908947_Ampliseq 22826 22828 AAT S S:N440 S:N440K
MN908947_Ampliseq 22862 22864 CTG S S:L452 S:L452R MN908947_Ampliseq 22862 22864 CTG S S:L452 S:L452R
MN908947_Ampliseq 22937 22939 AGC S S:S477 S:S477N MN908947_Ampliseq 22937 22939 AGC S S:S477 S:S477N
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