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Commit 8b51c743 authored by Gael  MILLOT's avatar Gael MILLOT
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correction in nanoForkSpeed_basecalling dockerfile title

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...@@ -75,7 +75,7 @@ Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the descriptio ...@@ -75,7 +75,7 @@ Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the descriptio
### 10.8 ### 10.8
Dockerfiles added: <br /> Dockerfiles added: <br />
ubuntu/v20.04/alohomora_merlin/v2.3 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.2:gitlab_v10.7, with alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added ubuntu/v20.04/alohomora_merlin_allegro/v1.0 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.1:gitlab_v9.5, with allegro soft and alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added
Warning: see section 8.5 below Warning: see section 8.5 below
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######################################################################### #########################################################################
## ## ## ##
## Dockerfile ## ## Dockerfile ##
## Slivar ## ## nanoForkSpeed_basecalling ##
## ## ## ##
## Gael A. Millot ## ## Gael A. Millot ##
## Bioinformatics and Biostatistics Hub ## ## Bioinformatics and Biostatistics Hub ##
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...@@ -34,6 +34,8 @@ if ( -d "c$chr") { ...@@ -34,6 +34,8 @@ if ( -d "c$chr") {
if (-f "allegro.log") {unlink "allegro.log";} if (-f "allegro.log") {unlink "allegro.log";}
if (-f "param_mpt.$chr") {unlink "param_mpt.$chr";} if (-f "param_mpt.$chr") {unlink "param_mpt.$chr";}
open (OUT,">allegro.in") || die "could not open allegro.in :$!\n"; open (OUT,">allegro.in") || die "could not open allegro.in :$!\n";
print OUT "MAXMEMORY 64000\n"; # memory max in GB ???
print OUT "HAPLOTYPE\n";
print OUT "PREFILE pedin.$chr\n"; print OUT "PREFILE pedin.$chr\n";
print OUT "DATFILE datain.$chr\n"; print OUT "DATFILE datain.$chr\n";
close (OUT); close (OUT);
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