Update of run.sh adding Salmon, Motif and GuitarPlot
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- INSTALL.txt 5 additions, 1 deletionINSTALL.txt
- README.md 58 additions, 41 deletionsREADME.md
- example/Liver_GuitarPlot.txt 3 additions, 0 deletionsexample/Liver_GuitarPlot.txt
- example/Liver_Motif.txt 12 additions, 0 deletionsexample/Liver_Motif.txt
- example/Liver_Motif_DiffPeaks.txt 1 addition, 0 deletionsexample/Liver_Motif_DiffPeaks.txt
- run.sh 108 additions, 20 deletionsrun.sh
- src/R/analysis_salmon_dexseq.R 625 additions, 625 deletionssrc/R/analysis_salmon_dexseq.R
- src/R/diff_methyl.R 303 additions, 308 deletionssrc/R/diff_methyl.R
- src/R/motif_analysis.R 305 additions, 300 deletionssrc/R/motif_analysis.R
- src/R/run_guitar_plot.R 0 additions, 0 deletionssrc/R/run_guitar_plot.R
- src/R/venns.R 79 additions, 77 deletionssrc/R/venns.R
- src/bash/genome.sh 9 additions, 0 deletionssrc/bash/genome.sh
- src/bash/setup.sh 5 additions, 0 deletionssrc/bash/setup.sh
- src/python/motif/__init__.py 0 additions, 0 deletionssrc/python/motif/__init__.py
- src/python/motif/create_fimo_sh.py 106 additions, 0 deletionssrc/python/motif/create_fimo_sh.py
- src/python/motif/create_motif_table.py 2 additions, 2 deletionssrc/python/motif/create_motif_table.py
- src/python/motif/parse_motif_search.py 348 additions, 0 deletionssrc/python/motif/parse_motif_search.py
- src/python/motif/regroup_figures_motif.py 104 additions, 0 deletionssrc/python/motif/regroup_figures_motif.py
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