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PHINDaccess_epigenomics
Commits
62d9515f
Commit
62d9515f
authored
May 11, 2022
by
Victoire BAILLET
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Update Wednesday/ATACflow.md
parent
9083e9ce
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62d9515f
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@@ -114,7 +114,7 @@ fragments_selection:
bamCoverage:
do: yes
options: "--outFileFormat bigwig --binSize 1 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
options: "--outFileFormat bigwig --binSize 1
0
--effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
threads: 4
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@@ -132,7 +132,7 @@ computeMatrix:
-
Note that
`--no-model`
is used by default in this pipeline. Add
`--shift -100`
to options. When --nomodel is set, MACS will use this value to move cutting ends (5') then apply --extsize from 5' to 3' direction to extend them to fragments.
-
Adjus
t extsize to 200
-
Se
t extsize to 200
```
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