Commit 62d9515f authored by Victoire  BAILLET's avatar Victoire BAILLET
Browse files

Update Wednesday/ATACflow.md

parent 9083e9ce
......@@ -114,7 +114,7 @@ fragments_selection:
bamCoverage:
do: yes
options: "--outFileFormat bigwig --binSize 1 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
options: "--outFileFormat bigwig --binSize 10 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
threads: 4
......@@ -132,7 +132,7 @@ computeMatrix:
- Note that `--no-model` is used by default in this pipeline. Add `--shift -100` to options. When --nomodel is set, MACS will use this value to move cutting ends (5') then apply --extsize from 5' to 3' direction to extend them to fragments.
- Adjust extsize to 200
- Set extsize to 200
```
......
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