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Commit 1b582d96 authored by Rachel  LEGENDRE's avatar Rachel LEGENDRE
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change igv directory

parent 349e29df
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......@@ -429,12 +429,12 @@ if config["bamCoverage"]["do"]:
if config["bamCoverage"]["igv_session"]:
igv_session_input = expand(bamCoverage_output, SAMPLE=samples, REF=ref, MAP=mapper)
igv_session_output = os.path.join(analysis_dir, "04-IGV/igv_session.xml")
igv_session_output = os.path.join(analysis_dir, "06-IGV/igv_session.xml")
igv_session_genome = ref
igv_session_wdir = os.path.join(analysis_dir, "04-IGV/")
igv_session_wdir = os.path.join(analysis_dir, "06-IGV/")
igv_session_autoScale = "True"
igv_session_normalize = "False"
igv_session_log_out = os.path.join(analysis_dir, "04-IGV/logs/igv_session.out")
igv_session_log_out = os.path.join(analysis_dir, "06-IGV/logs/igv_session.out")
final_output.extend([igv_session_output])
include: os.path.join(RULES, "igv_session.rules")
......
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