Commits · 8345be11b449d062f89921d46fec85431e3d079b · iPPIDB / ippidb-web

May 07, 2018
- use another strategy to avoid matplotlib backend error · 8345be11
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: d20b0efb39ae273a99bfdfa19d9fe216afe2ec7b
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  8345be11
- set matplotlib backend to Agg · a66174d4
  Hervé MENAGER authored 6 years ago
```
to avoid useless complaints about missing TkInter


Former-commit-id: 28cc2814cdecc8624a779b4cca72f43d62f6ed71
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  a66174d4
- add matplotlib requirement · 66c10118
  Hervé MENAGER authored 6 years ago
```
(for the PCA correlation circle)


Former-commit-id: e905ee6df2806876c71eb8a0076db4b37b2e410a
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  66c10118
May 06, 2018
- save and display the PCA correlation circle · 43c4ea65
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 42b2da5f48c598d4075607c9a59ae18ff65df1be
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  43c4ea65
- remove debug prints in PCA analysis script · f2b104f6
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 8292a203cdc172f2adc2bc5aaa1e6ced28255420
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  f2b104f6
- generate correlation circle for the PCA (#49), WIP · 5ce2be2c
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 414f368d52e5d67dcbc3dbcb66cd2edf04ffeb4a
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  5ce2be2c
- change compound features selection for the PCA · f8e055c0
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 1238d7d963ed74e098df7ab4e0330d7a11b020ea
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  f8e055c0
- make sure compound PCA biplot has the right aspect ratio · 01bd762c
  Hervé MENAGER authored 6 years ago
```
as requested in #49


Former-commit-id: 1c3938a081be5b900b7199fdca1f014182f78504
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  01bd762c
May 05, 2018
- add URL polyfill for older browsers · a02ffdaa
  Hervé MENAGER authored 6 years ago
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Former-commit-id: c6f710178efd92ab3847b2518eda34eacc1e7374
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  a02ffdaa
- javascript compatibility fix for Safari · 05dd3424
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 2a4f71b6f242236f25e44ac4209ee479a5dbd776
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  05dd3424
May 04, 2018
- correct compound card HTML · d8830c39
  Hervé MENAGER authored 6 years ago
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Former-commit-id: ffd06b797a4213c60a4ba27e60ef2f7867aefc89
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  d8830c39
May 03, 2018

remove dependency to django_pandas, not used · c42ac065

Hervé MENAGER authored 6 years ago

django_pandas does not enable the generation of dataframe from
model properties, only from fields


Former-commit-id: 72af7cfae43215f1284df1be8f95cfba1d1bc423

c42ac065

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- correct tooltip in LE-LLE plot · 73e94fb3
  Hervé MENAGER authored 6 years ago
```
according to PPI family name mods for #55


Former-commit-id: c7fa1ebbd84978f161f528f2b400392fd7ddd152
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  73e94fb3
- add uniprot links in compound card + minor reformats · 5bfe3038
  Hervé MENAGER authored 6 years ago
```
(closes #54)


Former-commit-id: 1f84ff0d08778a7b8253f814cd311172d254c8ef
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  5bfe3038
- correct plural for PpiFamily class · d03907b9
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 0e507767070425a3f0686d7c6c1dc973aef9b5d3
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  d03907b9
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
```
(closes #55)


Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
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  11b2efc0
- enable listing and displaying PPI families for a compound · 2e8935e4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 8e38acc04f6bb2e703791158b930ee6699e18fec
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  2e8935e4
- update "base DB" from last PPI family migration correction (#55) · f655abd1
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: c3fbd95196b8276b31260aa22a65bb55bdb04c04
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  f655abd1
- correct ppi families migration · 41cbb5bb
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: f2803177850cdca919a790ccb274ce5d350ca10d
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  41cbb5bb
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
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  4cebe0c4
Apr 13, 2018
- correct a bit the tab code and hashes · 3d48e359
  Hervé MENAGER authored 6 years ago
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- jump to active hash if none defined
- readable hashes (remove the v-pills part)


Former-commit-id: 8ce1a2cbe377942ef4f7cf2e87c398c98add6c7a
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  3d48e359
- hyperlink-based tab navigation for the compound card, first draft · c18dd0ea
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 6e2693ace25440b4b5d051bbcc45a8c40446883e
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  c18dd0ea
Apr 12, 2018
- improve physicochemical filters table appearance · 8402f348
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: b18c0c2eb0dde8ca71fd0d20e7a2c09d1a8c2c14
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  8402f348
- move the compound image to the left to always have it visible · 01b1144a
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: fc441d2bc608f1c2ba88f56383eff96ac473ccf9
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  01b1144a
- correct the compound tab le-lle biplot navigation function. · 7d14657b
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: badfa42f28deaf1a7b2ca206f9052aded8a7b5e4
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  7d14657b
- highlight better best activity in compound card pharmacology tab · e2534c97
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: ecb0c7abff460e3c4b14f6166edcae3ea4b43790
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  e2534c97
- Add cell line info for tests in compound card pharmacology tab · 9afdc523
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 44951879e0dbcafb87144a65955d04ebed96763c
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  9afdc523
Apr 11, 2018
- forgot biblio simplelink template in last commit · e1e053cd
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: b636f91809439af36a1614a7585030eb09b881bf
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  e1e053cd
- add model and template code for compound pharmacology tab · 5c7fd64c
  Hervé MENAGER authored 6 years ago
```
still missing:
- sort pXC50 with ki > kd > ic50 > ec50 rule
- add PPI families in the model (and migrate them)


Former-commit-id: 222c0792c744baa037d5c109337d865669e4fa1a
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  5c7fd64c
- minor comments and style improvements · c7e0ad5b
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a3a34d0f32125c4da18744b97da796a16d8e056f
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  c7e0ad5b
- compound best pXC50 activity is for all types of activity registered · d82ea146
  Hervé MENAGER authored 6 years ago
```
and not only pIC50+pEC50 (discussed with @osperand)


Former-commit-id: b5e46f34952deba8ed94ecddee199e999f9940de
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  d82ea146
Apr 09, 2018
- add title to the compound detail page · 831bdd98
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a0da6601ba238413d362e0c792851efd691610f8
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  831bdd98
Apr 08, 2018
- filter LE-LLE biplot data for only pXC50 activity results · eebeef8d
  Hervé MENAGER authored 6 years ago
```
and try to take into account if no data for this activity


Former-commit-id: 62ae7b8832a9bd9e372ff59c43a6ef2dfcaa329f
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  eebeef8d
- correct typo · fee32463
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 4d94e35c4902f9095809f98cf6b7d8aac1ae8213
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  fee32463
- add a better tooltip on LE-LLE biplot hover · 5f885826
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 6378ccdbda7ae16cb76c2d4ce35a96e06cbccf23
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  5f885826
- refactor LE-LLE biplot into a js function · 3cf40c20
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 696b9a6cfa986c9919cca972761c7284cfd23440
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  3cf40c20
- add "compound target family" to the LE-LLE plot · ca80e1ec
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a8980972bc9fdf6728a1b910230b59734d4311ff
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  ca80e1ec
- precompute and store the LE-LLE biplot data in the database · 3e2b9dd3
  Hervé MENAGER authored 6 years ago
```
precompute with python manage lle_le


Former-commit-id: c831ad2782e66bdbf4127ee870d5748b89a67abe
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  3e2b9dd3
- add LE-LLE biplot to compound card computed dynamically · 93ca4644
  Hervé MENAGER authored 6 years ago
```
this is obviously too long to compute. these data should be stored
in the DB.


Former-commit-id: 0bfa4d9cab060401b44021ccf4a487b4a08c1bb9
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  93ca4644