Commits · 8d877cabececa4453da59d7ef982879fa4b6ed5a · iPPIDB / ippidb-web

May 03, 2018

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- correct tooltip in LE-LLE plot · 73e94fb3
  Hervé MENAGER authored 6 years ago
```
according to PPI family name mods for #55


Former-commit-id: c7fa1ebbd84978f161f528f2b400392fd7ddd152
```
  73e94fb3
- add uniprot links in compound card + minor reformats · 5bfe3038
  Hervé MENAGER authored 6 years ago
```
(closes #54)


Former-commit-id: 1f84ff0d08778a7b8253f814cd311172d254c8ef
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  5bfe3038
- correct plural for PpiFamily class · d03907b9
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 0e507767070425a3f0686d7c6c1dc973aef9b5d3
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  d03907b9
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
```
(closes #55)


Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
```
  11b2efc0
- enable listing and displaying PPI families for a compound · 2e8935e4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 8e38acc04f6bb2e703791158b930ee6699e18fec
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  2e8935e4
- update "base DB" from last PPI family migration correction (#55) · f655abd1
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: c3fbd95196b8276b31260aa22a65bb55bdb04c04
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  f655abd1
- correct ppi families migration · 41cbb5bb
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: f2803177850cdca919a790ccb274ce5d350ca10d
```
  41cbb5bb
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
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  4cebe0c4
Apr 13, 2018
- correct a bit the tab code and hashes · 3d48e359
  Hervé MENAGER authored 6 years ago
```
- jump to active hash if none defined
- readable hashes (remove the v-pills part)


Former-commit-id: 8ce1a2cbe377942ef4f7cf2e87c398c98add6c7a
```
  3d48e359
- hyperlink-based tab navigation for the compound card, first draft · c18dd0ea
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 6e2693ace25440b4b5d051bbcc45a8c40446883e
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  c18dd0ea
Apr 12, 2018
- improve physicochemical filters table appearance · 8402f348
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: b18c0c2eb0dde8ca71fd0d20e7a2c09d1a8c2c14
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  8402f348
- move the compound image to the left to always have it visible · 01b1144a
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: fc441d2bc608f1c2ba88f56383eff96ac473ccf9
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  01b1144a
- correct the compound tab le-lle biplot navigation function. · 7d14657b
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: badfa42f28deaf1a7b2ca206f9052aded8a7b5e4
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  7d14657b
- highlight better best activity in compound card pharmacology tab · e2534c97
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: ecb0c7abff460e3c4b14f6166edcae3ea4b43790
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  e2534c97
- Add cell line info for tests in compound card pharmacology tab · 9afdc523
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 44951879e0dbcafb87144a65955d04ebed96763c
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  9afdc523
Apr 11, 2018
- forgot biblio simplelink template in last commit · e1e053cd
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: b636f91809439af36a1614a7585030eb09b881bf
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  e1e053cd
- add model and template code for compound pharmacology tab · 5c7fd64c
  Hervé MENAGER authored 6 years ago
```
still missing:
- sort pXC50 with ki > kd > ic50 > ec50 rule
- add PPI families in the model (and migrate them)


Former-commit-id: 222c0792c744baa037d5c109337d865669e4fa1a
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  5c7fd64c
- minor comments and style improvements · c7e0ad5b
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a3a34d0f32125c4da18744b97da796a16d8e056f
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  c7e0ad5b
- compound best pXC50 activity is for all types of activity registered · d82ea146
  Hervé MENAGER authored 6 years ago
```
and not only pIC50+pEC50 (discussed with @osperand)


Former-commit-id: b5e46f34952deba8ed94ecddee199e999f9940de
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  d82ea146
Apr 09, 2018
- add title to the compound detail page · 831bdd98
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a0da6601ba238413d362e0c792851efd691610f8
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  831bdd98
Apr 08, 2018
- filter LE-LLE biplot data for only pXC50 activity results · eebeef8d
  Hervé MENAGER authored 6 years ago
```
and try to take into account if no data for this activity


Former-commit-id: 62ae7b8832a9bd9e372ff59c43a6ef2dfcaa329f
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  eebeef8d
- correct typo · fee32463
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 4d94e35c4902f9095809f98cf6b7d8aac1ae8213
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  fee32463
- add a better tooltip on LE-LLE biplot hover · 5f885826
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 6378ccdbda7ae16cb76c2d4ce35a96e06cbccf23
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  5f885826
- refactor LE-LLE biplot into a js function · 3cf40c20
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 696b9a6cfa986c9919cca972761c7284cfd23440
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  3cf40c20
- add "compound target family" to the LE-LLE plot · ca80e1ec
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: a8980972bc9fdf6728a1b910230b59734d4311ff
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  ca80e1ec
- precompute and store the LE-LLE biplot data in the database · 3e2b9dd3
  Hervé MENAGER authored 7 years ago
```
precompute with python manage lle_le


Former-commit-id: c831ad2782e66bdbf4127ee870d5748b89a67abe
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  3e2b9dd3
- add LE-LLE biplot to compound card computed dynamically · 93ca4644
  Hervé MENAGER authored 7 years ago
```
this is obviously too long to compute. these data should be stored
in the DB.


Former-commit-id: 0bfa4d9cab060401b44021ccf4a487b4a08c1bb9
```
  93ca4644
Apr 07, 2018
- add computing of LE and LLE in Compound · 0880187d
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: b1a17d4f65dc933c11891cee60d91e12334e41be
```
  0880187d
Apr 06, 2018
- Update TestForm content · 75776fb6
  Rachel TORCHET authored 7 years ago
```
Former-commit-id: a97b7503f52118217a2eea8451a2bf34a4418f5b
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  75776fb6
Apr 04, 2018
- started working on compound LE vs LLE biplot, WIP · a663f6d5
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 76a8d4129343edf8f59505cd3317ad37a2cde881
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  a663f6d5
- improve compound card physicochemistry tab layout · 0a2d515d
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 66c8a21a2ada793d69aa68728a39ba0df4880295
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  0a2d515d
- remove left and right margins in iPPIDB · 1134cb34
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 855a17d5c7bbc35c36ed7cc3228f6d74e5d254af
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  1134cb34
- use bundle version of bootstrap including popper.js required for dropdowns · ef82ce87
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 3a0743eb00092028d6e4b2f61c24800329e2e8e9
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  ef82ce87
Apr 03, 2018
- add radar chart for compound descriptors to the compound page · 93e0b18f
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 96b10e7bcfd6bf7bae944b6daaff470f465ef4b6
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  93e0b18f
- add table for "Physicochemical filters" in compound page · 1384f36a
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 7cd557d92730d0d98533ebf3c5a434ac60cf796e
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  1384f36a
Mar 30, 2018
- add database model PNG · 3702d238
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 6c84910de478642e4b03595446eeb81b9bb6e7a8
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  3702d238
- Update templates and add formset for ProteinDomainComplexForm step · cb8ffb60
  Rachel TORCHET authored 7 years ago
```
Former-commit-id: dd7136370f6e1e34a14350d5db56ba31d606822d
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  cb8ffb60
Mar 26, 2018
- keep previous IDs for compounds (close #51) · ec5e5231
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: dc7d75f5db848b8eab3228c01c4fe51c0a5e986c
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  ec5e5231
- Update ProteinDomainComplex step with view and css · 8109b94d
  Rachel TORCHET authored 7 years ago
```
Former-commit-id: d664306b26e4fc5534c0683d98b3c88596d20627
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  8109b94d