Commits · 90ca8468c4397d4d9278508963196cec05b045b2 · iPPIDB / ippidb-web

Jun 13, 2018

update DB to include back patent data and depending data · 90ca8468
Hervé MENAGER authored 6 years ago
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Former-commit-id: d7b91c565e463a0acb7e68a5002c55ba71ef555b
```
90ca8468

download patent info from Google instead of EPO · 987e9831

Hervé MENAGER authored 6 years ago

EPO REST API v3.1 is deprecated (see http://www.epo.org/service-support/updates/2018/20180104.html)
This fixes #72


Former-commit-id: 574d12295d9bb6b82c9741d9094963f8a51151f9

987e9831

Jun 12, 2018
- add meas. units in compounds list column headers · 4c6998b1
  Hervé MENAGER authored 6 years ago
```
fixes #70


Former-commit-id: 2a34c58e0fda012ed6ba6948ce559f58b236fe4f
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  4c6998b1
Jun 11, 2018
- update CompoundForm and TestsForm + JS files · e1c3aa10
  Rachel TORCHET authored 6 years ago
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Former-commit-id: a8921957bdc969b1e7e9a4bf7e61bb28f4384e38
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  e1c3aa10
May 28, 2018
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · e99eaf7c
  Rachel TORCHET authored 6 years ago
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Former-commit-id: 96954d2cc00252cbafc256ed6d090b42245f886d
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  e99eaf7c
- Update templates and Test form aspect + Add fun css label stuffs · 4c635b1a
  Rachel TORCHET authored 6 years ago
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Former-commit-id: ad4c3cb04f5c0cc3d0c356352218470d88175f44
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  4c635b1a
May 18, 2018
- add back bibliography-compound links · 93261f8c
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 346a1ef2b00b85257b53e1abbd555edca5020123
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  93261f8c
- recompute LE-LLE and PCA biplots on the data · c9f17a57
  Hervé MENAGER authored 6 years ago
```
closes #63


Former-commit-id: 73261eea928e083bb2f91f1d1c80b34ea50b9b14
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  c9f17a57
May 16, 2018
- set steps for compounds list filter as requested by @osperand · b4dcbb02
  Hervé MENAGER authored 6 years ago
```
closes #59


Former-commit-id: 6b6ad6df387da8a10932c6de58bd40aa6db7fb2d
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  b4dcbb02
- fix broken display modes in compounds list · bc8922c4
  Hervé MENAGER authored 6 years ago
```
close #62


Former-commit-id: 92bc4260853d100e5a578cbc5b36001e253870d9
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  bc8922c4
May 15, 2018
- add filter on number of H donors in compounds list · 8ed90bd7
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 4553bb7b7ccdac8ffecba46b8e203e66a84ad7a4
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  8ed90bd7
- add AlogP cutoff filter to compounds list · c8bd6fc0
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 700dd6db21f76e9330ff3effffd2468fba4ae793
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  c8bd6fc0
- refactor cutoff selection code for compounds list · 0137e3f6
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 933a7ef7694e2e54e12312dcfdd01910f3f87b33
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  0137e3f6
- cleanup PPI families in the initial DB · 32100a09
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 0744e9a5f04750804a7d3eab0417a85405f1f1e5
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  32100a09
- add slider-based filter for molecular weight · a586b311
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 6e14ea4702c022d0f04ff83db5da8899df0905c3
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  a586b311
May 14, 2018

upgrade bootstrap lib to v4.1 · 5b804935

Hervé MENAGER authored 6 years ago

this is to provide the brand new custom-slider CSS class


Former-commit-id: 7c329d1c2a821789a7e732627d62308b087363f7

5b804935

May 13, 2018
- code gardening in models · 1b887715
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 1a77fa40743d91a6e6e19eea5d497cede393f08b
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  1b887715
- add sorting options to compounds list table headers · 9179cf76
  Hervé MENAGER authored 6 years ago
```
as requested in #48


Former-commit-id: 2002ce71cfd5a26f73bd99286b58362f025a01c8
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  9179cf76
- first pass at sorting compounds in ascending/descending orders · 2094daa2
  Hervé MENAGER authored 6 years ago
```
(refers to #48)


Former-commit-id: 7888802c3ed03d6e8797784ffaa3cf0c0338d589
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  2094daa2
- strip whitespaces on PPI Family · ac03874f
  Hervé MENAGER authored 6 years ago
```
that cleans up the "duplicate" PPI Family in the legacy DB


Former-commit-id: 415786fd78adeec26a1ed30aa1ba18d9110febd3
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  ac03874f
- add filter on PPI family to compounds list · 0c1fd103
  Hervé MENAGER authored 6 years ago
```
closes #58


Former-commit-id: 5e08e600acf123da45426e04c5c388aa6b3c1a2a
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  0c1fd103
May 09, 2018

decrease alpha in biplot charts for "other families" · c532f6fc
Hervé MENAGER authored 6 years ago
```
see comments on #49


Former-commit-id: 25eb661ab3a83b9d5a17855ff4e9913bd8981eea
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c532f6fc

display selected compound in the chart with a bigger dot · 9233f3d6

Hervé MENAGER authored 6 years ago

so that it can be seen even if another compound has exactly the same position
(see remark from @osperand in #49)


Former-commit-id: 95db8f9cc42341f51028c64986a3fbc8b9e7afaa

9233f3d6

May 07, 2018
- use another strategy to avoid matplotlib backend error · 8345be11
  Hervé MENAGER authored 6 years ago
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Former-commit-id: d20b0efb39ae273a99bfdfa19d9fe216afe2ec7b
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  8345be11
- set matplotlib backend to Agg · a66174d4
  Hervé MENAGER authored 6 years ago
```
to avoid useless complaints about missing TkInter


Former-commit-id: 28cc2814cdecc8624a779b4cca72f43d62f6ed71
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  a66174d4
- add matplotlib requirement · 66c10118
  Hervé MENAGER authored 6 years ago
```
(for the PCA correlation circle)


Former-commit-id: e905ee6df2806876c71eb8a0076db4b37b2e410a
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  66c10118
May 06, 2018
- save and display the PCA correlation circle · 43c4ea65
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 42b2da5f48c598d4075607c9a59ae18ff65df1be
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  43c4ea65
- remove debug prints in PCA analysis script · f2b104f6
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 8292a203cdc172f2adc2bc5aaa1e6ced28255420
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  f2b104f6
- generate correlation circle for the PCA (#49), WIP · 5ce2be2c
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 414f368d52e5d67dcbc3dbcb66cd2edf04ffeb4a
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  5ce2be2c
- change compound features selection for the PCA · f8e055c0
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 1238d7d963ed74e098df7ab4e0330d7a11b020ea
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  f8e055c0
- make sure compound PCA biplot has the right aspect ratio · 01bd762c
  Hervé MENAGER authored 6 years ago
```
as requested in #49


Former-commit-id: 1c3938a081be5b900b7199fdca1f014182f78504
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  01bd762c
May 05, 2018
- add URL polyfill for older browsers · a02ffdaa
  Hervé MENAGER authored 6 years ago
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Former-commit-id: c6f710178efd92ab3847b2518eda34eacc1e7374
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  a02ffdaa
- javascript compatibility fix for Safari · 05dd3424
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 2a4f71b6f242236f25e44ac4209ee479a5dbd776
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  05dd3424
May 04, 2018
- correct compound card HTML · d8830c39
  Hervé MENAGER authored 6 years ago
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Former-commit-id: ffd06b797a4213c60a4ba27e60ef2f7867aefc89
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  d8830c39
May 03, 2018

remove dependency to django_pandas, not used · c42ac065

Hervé MENAGER authored 6 years ago

django_pandas does not enable the generation of dataframe from
model properties, only from fields


Former-commit-id: 72af7cfae43215f1284df1be8f95cfba1d1bc423

c42ac065

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- correct tooltip in LE-LLE plot · 73e94fb3
  Hervé MENAGER authored 6 years ago
```
according to PPI family name mods for #55


Former-commit-id: c7fa1ebbd84978f161f528f2b400392fd7ddd152
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  73e94fb3
- add uniprot links in compound card + minor reformats · 5bfe3038
  Hervé MENAGER authored 6 years ago
```
(closes #54)


Former-commit-id: 1f84ff0d08778a7b8253f814cd311172d254c8ef
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  5bfe3038
- correct plural for PpiFamily class · d03907b9
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 0e507767070425a3f0686d7c6c1dc973aef9b5d3
```
  d03907b9
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
```
(closes #55)


Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
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  11b2efc0