Commits · a586b311851316014a1862276a2449be7630538c · iPPIDB / ippidb-web

May 15, 2018
- add slider-based filter for molecular weight · a586b311
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 6e14ea4702c022d0f04ff83db5da8899df0905c3
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  a586b311
May 14, 2018

upgrade bootstrap lib to v4.1 · 5b804935

Hervé MENAGER authored 6 years ago

this is to provide the brand new custom-slider CSS class


Former-commit-id: 7c329d1c2a821789a7e732627d62308b087363f7

5b804935

May 13, 2018
- code gardening in models · 1b887715
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 1a77fa40743d91a6e6e19eea5d497cede393f08b
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  1b887715
- add sorting options to compounds list table headers · 9179cf76
  Hervé MENAGER authored 6 years ago
```
as requested in #48


Former-commit-id: 2002ce71cfd5a26f73bd99286b58362f025a01c8
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  9179cf76
- first pass at sorting compounds in ascending/descending orders · 2094daa2
  Hervé MENAGER authored 6 years ago
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(refers to #48)


Former-commit-id: 7888802c3ed03d6e8797784ffaa3cf0c0338d589
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  2094daa2
- strip whitespaces on PPI Family · ac03874f
  Hervé MENAGER authored 6 years ago
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that cleans up the "duplicate" PPI Family in the legacy DB


Former-commit-id: 415786fd78adeec26a1ed30aa1ba18d9110febd3
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  ac03874f
- add filter on PPI family to compounds list · 0c1fd103
  Hervé MENAGER authored 6 years ago
```
closes #58


Former-commit-id: 5e08e600acf123da45426e04c5c388aa6b3c1a2a
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  0c1fd103
May 09, 2018

decrease alpha in biplot charts for "other families" · c532f6fc
Hervé MENAGER authored 6 years ago
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see comments on #49


Former-commit-id: 25eb661ab3a83b9d5a17855ff4e9913bd8981eea
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c532f6fc

display selected compound in the chart with a bigger dot · 9233f3d6

Hervé MENAGER authored 6 years ago

so that it can be seen even if another compound has exactly the same position
(see remark from @osperand in #49)


Former-commit-id: 95db8f9cc42341f51028c64986a3fbc8b9e7afaa

9233f3d6

May 07, 2018
- use another strategy to avoid matplotlib backend error · 8345be11
  Hervé MENAGER authored 6 years ago
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Former-commit-id: d20b0efb39ae273a99bfdfa19d9fe216afe2ec7b
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  8345be11
- set matplotlib backend to Agg · a66174d4
  Hervé MENAGER authored 6 years ago
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to avoid useless complaints about missing TkInter


Former-commit-id: 28cc2814cdecc8624a779b4cca72f43d62f6ed71
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  a66174d4
- add matplotlib requirement · 66c10118
  Hervé MENAGER authored 6 years ago
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(for the PCA correlation circle)


Former-commit-id: e905ee6df2806876c71eb8a0076db4b37b2e410a
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  66c10118
May 06, 2018
- save and display the PCA correlation circle · 43c4ea65
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 42b2da5f48c598d4075607c9a59ae18ff65df1be
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  43c4ea65
- remove debug prints in PCA analysis script · f2b104f6
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 8292a203cdc172f2adc2bc5aaa1e6ced28255420
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  f2b104f6
- generate correlation circle for the PCA (#49), WIP · 5ce2be2c
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 414f368d52e5d67dcbc3dbcb66cd2edf04ffeb4a
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  5ce2be2c
- change compound features selection for the PCA · f8e055c0
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 1238d7d963ed74e098df7ab4e0330d7a11b020ea
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  f8e055c0
- make sure compound PCA biplot has the right aspect ratio · 01bd762c
  Hervé MENAGER authored 6 years ago
```
as requested in #49


Former-commit-id: 1c3938a081be5b900b7199fdca1f014182f78504
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  01bd762c
May 05, 2018
- add URL polyfill for older browsers · a02ffdaa
  Hervé MENAGER authored 6 years ago
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Former-commit-id: c6f710178efd92ab3847b2518eda34eacc1e7374
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  a02ffdaa
- javascript compatibility fix for Safari · 05dd3424
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 2a4f71b6f242236f25e44ac4209ee479a5dbd776
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  05dd3424
May 04, 2018
- correct compound card HTML · d8830c39
  Hervé MENAGER authored 6 years ago
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Former-commit-id: ffd06b797a4213c60a4ba27e60ef2f7867aefc89
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  d8830c39
May 03, 2018

remove dependency to django_pandas, not used · c42ac065

Hervé MENAGER authored 6 years ago

django_pandas does not enable the generation of dataframe from
model properties, only from fields


Former-commit-id: 72af7cfae43215f1284df1be8f95cfba1d1bc423

c42ac065

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- correct tooltip in LE-LLE plot · 73e94fb3
  Hervé MENAGER authored 6 years ago
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according to PPI family name mods for #55


Former-commit-id: c7fa1ebbd84978f161f528f2b400392fd7ddd152
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  73e94fb3
- add uniprot links in compound card + minor reformats · 5bfe3038
  Hervé MENAGER authored 6 years ago
```
(closes #54)


Former-commit-id: 1f84ff0d08778a7b8253f814cd311172d254c8ef
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  5bfe3038
- correct plural for PpiFamily class · d03907b9
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 0e507767070425a3f0686d7c6c1dc973aef9b5d3
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  d03907b9
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
```
(closes #55)


Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
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  11b2efc0
- enable listing and displaying PPI families for a compound · 2e8935e4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 8e38acc04f6bb2e703791158b930ee6699e18fec
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  2e8935e4
- update "base DB" from last PPI family migration correction (#55) · f655abd1
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: c3fbd95196b8276b31260aa22a65bb55bdb04c04
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  f655abd1
- correct ppi families migration · 41cbb5bb
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: f2803177850cdca919a790ccb274ce5d350ca10d
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  41cbb5bb
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
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  4cebe0c4
Apr 13, 2018
- correct a bit the tab code and hashes · 3d48e359
  Hervé MENAGER authored 6 years ago
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- jump to active hash if none defined
- readable hashes (remove the v-pills part)


Former-commit-id: 8ce1a2cbe377942ef4f7cf2e87c398c98add6c7a
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  3d48e359
- hyperlink-based tab navigation for the compound card, first draft · c18dd0ea
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 6e2693ace25440b4b5d051bbcc45a8c40446883e
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  c18dd0ea
Apr 12, 2018
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · b1ef512e
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 6882060ce5abeafb3fd78a5cda6ed28bb7b18d88
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  b1ef512e
- improve physicochemical filters table appearance · 8402f348
  Hervé MENAGER authored 6 years ago
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Former-commit-id: b18c0c2eb0dde8ca71fd0d20e7a2c09d1a8c2c14
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  8402f348
- move the compound image to the left to always have it visible · 01b1144a
  Hervé MENAGER authored 6 years ago
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Former-commit-id: fc441d2bc608f1c2ba88f56383eff96ac473ccf9
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  01b1144a
- bug fix: chain key · 42c3976d
  Fabien MAREUIL authored 6 years ago
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Former-commit-id: d09e8892429a5733af298c945c3b008672c63bf8
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  42c3976d
- get_pdb_structure integration in get_interface_residues_ppc_dimer_IN_PROGRESS · 2b8f294f
  Fabien MAREUIL authored 6 years ago
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Former-commit-id: 0bc489b453a52b5189367b08427471263e1f3f9a
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  2b8f294f
- bug fix: interface residues · 3e653f2d
  Fabien MAREUIL authored 6 years ago
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Former-commit-id: 55c5ce841a8458bf63227d647eb309626cd2a4c0
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  3e653f2d
- method get_molecules · e38fcd7a
  Fabien MAREUIL authored 6 years ago
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Former-commit-id: be15bd63263293acf0dbbe23e7ad4965ef7b4b10
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  e38fcd7a
- reformat · 1e790032
  Fabien MAREUIL authored 6 years ago
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Former-commit-id: dbc51f36f32ea66e9d4c7f9ceda01e300ca1db4a
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  1e790032