Commits · c42ac06515f87efd48dee3212a1b8c32f3cd9e72 · iPPIDB / ippidb-web

May 03, 2018

remove dependency to django_pandas, not used · c42ac065

Hervé MENAGER authored 6 years ago

django_pandas does not enable the generation of dataframe from
model properties, only from fields


Former-commit-id: 72af7cfae43215f1284df1be8f95cfba1d1bc423

c42ac065

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- correct tooltip in LE-LLE plot · 73e94fb3
  Hervé MENAGER authored 6 years ago
  
  according to PPI family name mods for #55 Former-commit-id: c7fa1ebbd84978f161f528f2b400392fd7ddd152
  73e94fb3
- add uniprot links in compound card + minor reformats · 5bfe3038
  Hervé MENAGER authored 6 years ago
  
  (closes #54) Former-commit-id: 1f84ff0d08778a7b8253f814cd311172d254c8ef
  5bfe3038
- correct plural for PpiFamily class · d03907b9
  Hervé MENAGER authored 6 years ago
  
  Former-commit-id: 0e507767070425a3f0686d7c6c1dc973aef9b5d3
  d03907b9
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
  
  (closes #55) Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
  11b2efc0
- enable listing and displaying PPI families for a compound · 2e8935e4
  Hervé MENAGER authored 6 years ago
  
  Former-commit-id: 8e38acc04f6bb2e703791158b930ee6699e18fec
  2e8935e4
- update "base DB" from last PPI family migration correction (#55) · f655abd1
  Hervé MENAGER authored 6 years ago
  
  Former-commit-id: c3fbd95196b8276b31260aa22a65bb55bdb04c04
  f655abd1
- correct ppi families migration · 41cbb5bb
  Hervé MENAGER authored 6 years ago
  
  Former-commit-id: f2803177850cdca919a790ccb274ce5d350ca10d
  41cbb5bb
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored 6 years ago
  
  Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
  4cebe0c4
Apr 13, 2018
- correct a bit the tab code and hashes · 3d48e359
  Hervé MENAGER authored 7 years ago
  
  - jump to active hash if none defined - readable hashes (remove the v-pills part) Former-commit-id: 8ce1a2cbe377942ef4f7cf2e87c398c98add6c7a
  3d48e359
- hyperlink-based tab navigation for the compound card, first draft · c18dd0ea
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 6e2693ace25440b4b5d051bbcc45a8c40446883e
  c18dd0ea
Apr 12, 2018
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · b1ef512e
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 6882060ce5abeafb3fd78a5cda6ed28bb7b18d88
  b1ef512e
- improve physicochemical filters table appearance · 8402f348
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: b18c0c2eb0dde8ca71fd0d20e7a2c09d1a8c2c14
  8402f348
- move the compound image to the left to always have it visible · 01b1144a
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: fc441d2bc608f1c2ba88f56383eff96ac473ccf9
  01b1144a
- bug fix: chain key · 42c3976d
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: d09e8892429a5733af298c945c3b008672c63bf8
  42c3976d
- get_pdb_structure integration in get_interface_residues_ppc_dimer_IN_PROGRESS · 2b8f294f
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: 0bc489b453a52b5189367b08427471263e1f3f9a
  2b8f294f
- bug fix: interface residues · 3e653f2d
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: 55c5ce841a8458bf63227d647eb309626cd2a4c0
  3e653f2d
- method get_molecules · e38fcd7a
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: be15bd63263293acf0dbbe23e7ad4965ef7b4b10
  e38fcd7a
- reformat · 1e790032
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: dbc51f36f32ea66e9d4c7f9ceda01e300ca1db4a
  1e790032
- new script alexa · a6a52657
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: e36ec1fe4be85cdf789737bc3123acf1809d6ea7
  a6a52657
- test · 7f8036d0
  Fabien MAREUIL authored 7 years ago
  
  Former-commit-id: 7c18b6c814ffd4a7b861359f4dadbceb0b62efa9
  7f8036d0
- correct the compound tab le-lle biplot navigation function. · 7d14657b
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: badfa42f28deaf1a7b2ca206f9052aded8a7b5e4
  7d14657b
- highlight better best activity in compound card pharmacology tab · e2534c97
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: ecb0c7abff460e3c4b14f6166edcae3ea4b43790
  e2534c97
- Add cell line info for tests in compound card pharmacology tab · 9afdc523
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 44951879e0dbcafb87144a65955d04ebed96763c
  9afdc523
Apr 11, 2018
- forgot biblio simplelink template in last commit · e1e053cd
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: b636f91809439af36a1614a7585030eb09b881bf
  e1e053cd
- add model and template code for compound pharmacology tab · 5c7fd64c
  Hervé MENAGER authored 7 years ago
  
  still missing: - sort pXC50 with ki > kd > ic50 > ec50 rule - add PPI families in the model (and migrate them) Former-commit-id: 222c0792c744baa037d5c109337d865669e4fa1a
  5c7fd64c
- minor comments and style improvements · c7e0ad5b
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: a3a34d0f32125c4da18744b97da796a16d8e056f
  c7e0ad5b
- compound best pXC50 activity is for all types of activity registered · d82ea146
  Hervé MENAGER authored 7 years ago
  
  and not only pIC50+pEC50 (discussed with @osperand) Former-commit-id: b5e46f34952deba8ed94ecddee199e999f9940de
  d82ea146
Apr 09, 2018
- add title to the compound detail page · 831bdd98
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: a0da6601ba238413d362e0c792851efd691610f8
  831bdd98
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 88cda8ba
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 8c2a8fc0227d332ac9a1ec8f3a64cd16320455b6
  88cda8ba
Apr 08, 2018
- filter LE-LLE biplot data for only pXC50 activity results · eebeef8d
  Hervé MENAGER authored 7 years ago
  
  and try to take into account if no data for this activity Former-commit-id: 62ae7b8832a9bd9e372ff59c43a6ef2dfcaa329f
  eebeef8d
- correct typo · fee32463
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 4d94e35c4902f9095809f98cf6b7d8aac1ae8213
  fee32463
- add a better tooltip on LE-LLE biplot hover · 5f885826
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 6378ccdbda7ae16cb76c2d4ce35a96e06cbccf23
  5f885826
- refactor LE-LLE biplot into a js function · 3cf40c20
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: 696b9a6cfa986c9919cca972761c7284cfd23440
  3cf40c20
- add "compound target family" to the LE-LLE plot · ca80e1ec
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: a8980972bc9fdf6728a1b910230b59734d4311ff
  ca80e1ec
- precompute and store the LE-LLE biplot data in the database · 3e2b9dd3
  Hervé MENAGER authored 7 years ago
  
  precompute with python manage lle_le Former-commit-id: c831ad2782e66bdbf4127ee870d5748b89a67abe
  3e2b9dd3
- add LE-LLE biplot to compound card computed dynamically · 93ca4644
  Hervé MENAGER authored 7 years ago
  
  this is obviously too long to compute. these data should be stored in the DB. Former-commit-id: 0bfa4d9cab060401b44021ccf4a487b4a08c1bb9
  93ca4644
Apr 07, 2018
- add computing of LE and LLE in Compound · 0880187d
  Hervé MENAGER authored 7 years ago
  
  Former-commit-id: b1a17d4f65dc933c11891cee60d91e12334e41be
  0880187d
Apr 06, 2018
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 2b89ddbf
  Rachel TORCHET authored 7 years ago
  
  Former-commit-id: 3314235576b8b3cfa09dbc512c54e0bc6b65e8c1
  2b89ddbf