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Commit c7d720fa authored by Johann  Dreo's avatar Johann Dreo
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remove run-maestro scripts

parent 3db4c2e2
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#!/bin/sh
module load Python/3.8.1
module load snakemake
mkdir -p slurmout
sbatch --job-name "PARIS" snakemake --configfile config.yaml --jobs 15000
#!/bin/sh
runs=5000
#SBATCH --natsks=15000
#SBATCH --cpu-per-task=1
mkdir -p logs
FRICTIONLESSER="../../release/app/frictionlesser"
for size in 10 20 30; do
mkdir -p signature_of_${size}-genes
done
for seed in $(seq $runs); do
for size in 10 20 30; do
srun --quiet --job-name z${size}_s${seed} --mem 16G --cpus-per-task=1 --partition common --qos normal --output signature_of_${size}-genes/signature_${seed} --error logs/%j.log ${FRICTIONLESSER} --ranks=ranks.tsv --cache-transcriptome=cache/trans.cache.dat --cache-size=cache/size_${size}.cache.dat --ngenes=${size} --seed=${seed} &
done
done
# wait for all the steps to end before terminating the sbatch script
wait
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