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Léo HENCHES
jass
Commits
338f5c8c
Commit
338f5c8c
authored
7 years ago
by
Hervé MENAGER
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correct parameter name in read_dataframe_and_stringize()
parent
ffbd17ef
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jass/models/worktable.py
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jass/models/worktable.py
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jass/models/worktable.py
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338f5c8c
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@@ -182,15 +182,15 @@ def create_worktable_file(phenotype_ids: List[str], init_file_path: str, project
format
=
'
table
'
,
data_columns
=
True
)
# Summary Table (contigency table)
hdf_work
.
close
()
def
read_dataframe_and_stringize
(
hdf_path
:
str
,
frame
:
str
):
def
read_dataframe_and_stringize
(
project_
hdf_path
:
str
,
frame
:
str
):
"""
Read a dataframe from a worktable file and reformat Region and Chromosome
numbers as strings.
This will eventually be deprecated once the js code accepts integers instead
of strings
:param hdf_path: path to the worktable file
:type hdf_path: str
:param
project_
hdf_path: path to the worktable file
:type
project_
hdf_path: str
:param frame: name of the frame to be read
:type frame: str
:return: The dataframe with converted Region and CHR columns
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