script to create local ms indexes

scripts/fill-local-meilisearch.sh

+#!/bin/bash 
+# REFSEQ
+df-wiki-cli meilisearch delete-all-documents refseq
+df-wiki-cli meilisearch update --file ../data/refseq_res.csv --document refseq
+
+
+# REF SEQ TAXO
+df-wiki-cli content refseq-group-per-assembly --input ../data/refseq_res.csv --output /tmp/refseqtaxo.csv
+df-wiki-cli meilisearch delete-all-documents refseqtaxo
+df-wiki-cli meilisearch update --file /tmp/refseqtaxo.csv --document refseqtaxo
+
+# REFSEQ TAXO TYPE
+
+df-wiki-cli content refseq-group-per-assembly-and-type --input ../data/refseq_res.csv --output /tmp/refseqtaxotype.csv
+df-wiki-cli meilisearch delete-all-documents refseqtaxotype
+df-wiki-cli meilisearch  update --file /tmp/refseqtaxotype.csv --document refseqtaxotype
+
+
+# SANITIZED REFSEQ
+df-wiki-cli content refseq-sanitized-hits --input ../data/refseq_res.csv --output /tmp/refseq-sanitized.csv
+
+df-wiki-cli meilisearch delete-all-documents refseqsanitized
+df-wiki-cli meilisearch update --file /tmp/refseq-sanitized.csv --document refseqsanitized 
+
+# systems
+df-wiki-cli content systems --dir ../content/3.defense-systems/ --pfam ../public/pfam-a-hmm.csv --output /tmp/list-systems.json
+df-wiki-cli meilisearch update --file /tmp/list-systems.json --document systems
+
+# STRUCTURE 
+df-wiki-cli meilisearch update --file ../data/all_predictions_statistics_clean.csv --document structure
+
+# ARTICLES
+# df-wiki-cli meilisearch delete-all-documents article
+# df-wiki-cli meilisearch