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Commit 4f015343 authored by Remi  PLANEL's avatar Remi PLANEL
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keep original name

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Pipeline #112454 failed with stages
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......@@ -48,14 +48,14 @@ get-pfam:
stage: get-data
before_script:
- apt update && apt install -y curl
- curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output pfam-data.gz
- curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output Pfam-A.hmm.dat.gz
- ls -al
script:
- gunzip pfam-data.gz
- ls -al pfam-data/
- gunzip Pfam-A.hmm.dat.gz
- ls -al
artifacts:
paths:
- pfam-data/Pfam-A.hmm.dat
- Pfam-A.hmm.dat
format-pfam:
image: python:3.11
......@@ -64,7 +64,7 @@ format-pfam:
- "get-pfam"
before_script:
- pip install pandas
- mv pfam-data/Pfam-A.hmm.dat scripts
- mv Pfam-A.hmm.dat scripts/
script:
- ./scripts/pfam-a-hmm-to-csv.py
- mv ./scripts/Pfam-A.hmm.dat.csv content/_partial/pfam-a-hmm.csv
......
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