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Metagenomics
metagenedb
Commits
f9ded802
Commit
f9ded802
authored
Dec 12, 2019
by
Kenzo-Hugo Hillion
♻
Browse files
update bioapi version
parent
f482559f
Changes
2
Hide whitespace changes
Inline
Side-by-side
backend/Pipfile.lock
View file @
f9ded802
...
...
@@ -25,7 +25,7 @@
},
"bioapi"
:
{
"git"
:
"https://github.com/khillion/bioapi.git"
,
"ref"
:
"
c1430f0668ca15bc5116337110d7a81f0621913a
"
"ref"
:
"
284ce40cd007c35d4e1fbaa394717ae8c2cc6c5d
"
},
"certifi"
:
{
"hashes"
:
[
...
...
@@ -411,7 +411,7 @@
"sha256:5b26757dc6f79a3b7dc9fab95359328d5747fcb2409d331ea66d0272b90ab2a0"
,
"sha256:8b995ffe925347a2138d7ac0fe77155e4311a0ea6d6da4f5128fe4b3cbe5ed71"
],
"markers"
:
"platform
_system
== '
D
arwin'"
,
"markers"
:
"
sys_
platform == '
d
arwin'"
,
"version"
:
"==0.1.0"
},
"astroid"
:
{
...
...
backend/scripts/populate_db/import_igc_data.py
View file @
f9ded802
...
...
@@ -10,7 +10,7 @@ from bioapi import (
MetageneDBCatalogGeneAPI
,
MetageneDBCatalogTaxonomyAPI
,
MetageneDBCatalogKeggOrthologyAPI
,
MetageneDBCatalogEggN
og
API
,
MetageneDBCatalogEggN
OG
API
,
)
from
requests.exceptions
import
HTTPError
from
slugify
import
slugify
...
...
@@ -26,7 +26,7 @@ class ImportIGCGenes(object):
METAGENEDB_TAXONOMY_API
=
MetageneDBCatalogTaxonomyAPI
METAGENEDB_FUNCTION_API
=
MetageneDBCatalogFunctionAPI
METAGENEDB_KEGG_API
=
MetageneDBCatalogKeggOrthologyAPI
METAGENEDB_EGGNOG_API
=
MetageneDBCatalogEggN
og
API
METAGENEDB_EGGNOG_API
=
MetageneDBCatalogEggN
OG
API
PHYLUM_COL
=
'taxo_phylum'
GENUS_COL
=
'taxo_genus'
...
...
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