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Metagenomics
snakemake
Commits
22379bcc
Commit
22379bcc
authored
Mar 16, 2020
by
Kenzo-Hugo Hillion
♻
Browse files
fix diamond rule
parent
a9f73d2f
Changes
2
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tools/eggnogmapper2/diamond/Snakefile
View file @
22379bcc
...
...
@@ -11,7 +11,7 @@ rule eggnogmapper2_diamond:
output:
__eggnogmapper2_diamond_output
params:
exec_command = __eggnogmapper2_exec_command + ' -m diamond',
exec_command = __eggnogmapper2_exec_command + ' -m diamond
--no_annot
',
output_prefix = __eggnogmapper2_diamond_output_prefix,
options = __eggnogmapper2_diamond_options
threads:
...
...
tools/eggnogmapper2/diamond/example_usage/config.yaml
View file @
22379bcc
...
...
@@ -12,4 +12,4 @@ samples:
eggnogmapper2
:
exec_command
:
"
/pasteur/homes/kehillio/venv/eggnog-mapper-v2/bin/python
/pasteur/homes/kehillio/tools/eggnog-mapper/emapper.py"
diamond
:
options
:
"
--no_annot
--no_file_comments"
options
:
"
--no_file_comments"
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