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Commit 22379bcc authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion :recycle:
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fix diamond rule

parent a9f73d2f
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1 merge request!4add rule for diamond through eggnogmapper2
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tools/eggnogmapper2/diamond/Snakefile
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...@@ -11,7 +11,7 @@ rule eggnogmapper2_diamond: ...@@ -11,7 +11,7 @@ rule eggnogmapper2_diamond:
output: output:
__eggnogmapper2_diamond_output __eggnogmapper2_diamond_output
params: params:
exec_command = __eggnogmapper2_exec_command + ' -m diamond', exec_command = __eggnogmapper2_exec_command + ' -m diamond --no_annot',
output_prefix = __eggnogmapper2_diamond_output_prefix, output_prefix = __eggnogmapper2_diamond_output_prefix,
options = __eggnogmapper2_diamond_options options = __eggnogmapper2_diamond_options
threads: threads:
......
tools/eggnogmapper2/diamond/example_usage/config.yaml
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View file @ 22379bcc
...@@ -12,4 +12,4 @@ samples: ...@@ -12,4 +12,4 @@ samples:
eggnogmapper2: eggnogmapper2:
exec_command: "/pasteur/homes/kehillio/venv/eggnog-mapper-v2/bin/python /pasteur/homes/kehillio/tools/eggnog-mapper/emapper.py" exec_command: "/pasteur/homes/kehillio/venv/eggnog-mapper-v2/bin/python /pasteur/homes/kehillio/tools/eggnog-mapper/emapper.py"
diamond: diamond:
options: "--no_annot --no_file_comments" options: "--no_file_comments"
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