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Commit 95f5e06a authored by Nicolas  MAILLET's avatar Nicolas MAILLET
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Remove fix for python3.5 compatibility

parent 40938218
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...@@ -219,7 +219,7 @@ def next_read(file, offset_start, offset_end): ...@@ -219,7 +219,7 @@ def next_read(file, offset_start, offset_end):
:type offset_end: int :type offset_end: int
""" """
# Is it a GZIP file? # Is it a GZIP file?
test_file = open(str(file), "rb") test_file = open(file, "rb")
# Get the first values # Get the first values
magic = test_file.read(2) magic = test_file.read(2)
# Close the file # Close the file
...@@ -227,7 +227,7 @@ def next_read(file, offset_start, offset_end): ...@@ -227,7 +227,7 @@ def next_read(file, offset_start, offset_end):
# Open the file, GZIP or not # Open the file, GZIP or not
with (gzip.open(file, "rb") if magic == b"\x1f\x8b" with (gzip.open(file, "rb") if magic == b"\x1f\x8b"
else open(str(file), "rb")) as in_file: else open(file, "rb")) as in_file:
first_line = in_file.readline().decode('utf-8') first_line = in_file.readline().decode('utf-8')
# FASTQ file # FASTQ file
if first_line.startswith("@"): if first_line.startswith("@"):
......
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