Commits · master · Rayan CHIKHI / serratus-batch-dl

Jun 23, 2020
- cleanup fix · ba287657
  Rayan authored 4 years ago
  
  ba287657
- dos2unix · 8a224330
  Rayan authored 4 years ago
  
  8a224330
- addeed core20_noSC · cda752f0
  Rayan CHIKHI authored 4 years ago
  
  cda752f0
- oops · 7a3ec3d4
  Rayan CHIKHI authored 4 years ago
  
  7a3ec3d4
- kill · 9b6978c2
  Rayan CHIKHI authored 4 years ago
  
  9b6978c2
- added 6.8k dataset · 68ad6773
  Rayan CHIKHI authored 4 years ago
  
  68ad6773
- missing files · 476ff8a1
  Rayan CHIKHI authored 4 years ago
  
  476ff8a1
Jun 20, 2020
- attempt to download missing files · 5ebe3309
  Rayan authored 4 years ago
  
  5ebe3309
- tweaks · 85d5f0b9
  Rayan CHIKHI authored 4 years ago
  
  85d5f0b9
- --max-size isnt recognized by prefetch?! · 04f89dde
  Rayan CHIKHI authored 4 years ago
  
  04f89dde
- apparently docker doesnt like my args · 262e1ba3
  Rayan CHIKHI authored 4 years ago
  
  262e1ba3
Jun 19, 2020
- catching even more read dl errors with that fastp robustness fix · bbd3cdb7
  Rayan CHIKHI authored 4 years ago
  
  bbd3cdb7
- updated unpaired support · 513c10bd
  Rayan CHIKHI authored 4 years ago
  
  513c10bd
- important fastp fix · a4df611f
  Rayan CHIKHI authored 4 years ago
  
  a4df611f
- significant overhaul of download script, more robust fastp, added sdb · 76f90e2a
  Rayan CHIKHI authored 4 years ago
  
  76f90e2a
Jun 17, 2020
- aws profile. how comes it wasn't committed before?! · d4c615f7
  Rayan CHIKHI authored 4 years ago
  
  d4c615f7
- tweaks · ed122dd6
  Rayan CHIKHI authored 4 years ago
  
  ed122dd6
- oops, parallel-fastq-dump is maybe using /tmp · 6905947c
  Rayan CHIKHI authored 4 years ago
  
  6905947c
Jun 16, 2020
- robustness increase, also got rid of nonzero vcpu desire · 896fc987
  Rayan CHIKHI authored 4 years ago
  
  896fc987
- renaming template · 7f26e6c3
  Rayan CHIKHI authored 4 years ago
  
  7f26e6c3
- fixed paths · 9e112f17
  Rayan CHIKHI authored 4 years ago
  
  9e112f17
- fixing some mistakes · 1e21f696
  Rayan CHIKHI authored 4 years ago
  
  1e21f696
- one more attempt at making an EBS volume.. · 1bac8ece
  Rayan CHIKHI authored 4 years ago
  
  1bac8ece
- switched from c5d local storage to a EBS · 3dee182a
  Rayan CHIKHI authored 4 years ago
  
  3dee182a
Jun 15, 2020
- got to again up max mem otherwise fastq-dump complaints · 05d642da
  Rayan CHIKHI authored 4 years ago
  
  05d642da
- robustness · 8b94b907
  Rayan CHIKHI authored 4 years ago
  
  8b94b907
- upped MaxvCpus · 597718e9
  Rayan CHIKHI authored 4 years ago
  
  597718e9
Jun 14, 2020
- missing file · 7ed77f06
  Rayan CHIKHI authored 4 years ago
  
  7ed77f06
Jun 12, 2020
- fix · cbe6e410
  Rayan CHIKHI authored 4 years ago
  
  cbe6e410
Jun 11, 2020
- initial commit · 651236ff
  Rayan CHIKHI authored 4 years ago
  
  651236ff