Update file jass_pipeline.nf

jass_pipeline.nf

@@ -16,12 +16,12 @@ params.meta_data = "${projectDir}"+"/input_files/Data_test_EAS.csv"
  // "${projectDir}"+"/input_files/Meta_data_preliminary_analysis.csv" file describing gwas summary statistic format
 params.gwas_folder = "${projectDir}"+'/test_data/hg38_EAS/' 
 
-params.region = Channel.fromPath("${projectDir}"+"/input_files/All_Regions_ALL_ensemble_1000G_hg38_EUR.bed")
+params.region = Channel.fromPath("${projectDir}"+"/input_files/All_Regions_ALL_ensemble_1000G_hg38_EAS.bed")
 params.ref_panel_WG = "${projectDir}"+"/Ref_Panel/1000G_EAS_0_01_chr22_21.csv"
 
 
 params.ancestry="EAS"
-params.prefix="ALL_ensemble_1000G_hg38_EUR_chr"
+params.prefix="ALL_ensemble_1000G_hg38_EAS_chr"
 params.prefix_Impute_GWAS="ALL_ensemble_1000G_hg38_EAS_"
 params.suffix=""
 params.LD_SCORE_folder='/pasteur/zeus/projets/p02/GGS_WKD/DATA_1000G/Panels/Matrix_LDSCORE/EAS/'
@@ -45,7 +45,7 @@ params.ld_type = "plink"
 params.ld_folder = Channel.fromPath("/pasteur/zeus/projets/p02/GGS_WKD/DATA_1000G/Panels/Matrix_LD_RAISS/EAS/*.ld").collect()
 params.ref_panel = '/pasteur/zeus/projets/p02/GGS_JASS/jass_analysis_pipeline/Ref_panel_by_chr/'
 chr_channel = Channel.from(1..22)
-params.ref_chr_path= Channel.fromPath("/pasteur/zeus/projets/p02/GGS_WKD/DATA_1000G/Panels/EUR/ALL_ensemble_1000G_hg38_EUR_chr*.bim").collect()
+params.ref_chr_path= Channel.fromPath("/pasteur/zeus/projets/p02/GGS_WKD/DATA_1000G/Panels/EAS/ALL_ensemble_1000G_hg38_EAS_chr*.bim").collect()
 
 params.perform_sanity_checks=false
 params.perform_accuracy_checks=false