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Merge branch 'DSL2_update' into 'master'
Upgrade of the pipeline to DSL2 See merge request statistical-genetics/jass_suite_pipeline!4
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- README.md 3 additions, 18 deletionsREADME.md
- Ref_Panel/1000G_AMR_0_01.csv 0 additions, 0 deletionsRef_Panel/1000G_AMR_0_01.csv
- Ref_Panel/1000G_EAS_0_01.csv 0 additions, 0 deletionsRef_Panel/1000G_EAS_0_01.csv
- Ref_Panel/1000G_EUR_0_01.csv 0 additions, 0 deletionsRef_Panel/1000G_EUR_0_01.csv
- Ref_Panel/1000G_SAS_0_01.csv 0 additions, 0 deletionsRef_Panel/1000G_SAS_0_01.csv
- bin/parse_correlation_results.py 1 addition, 0 deletionsbin/parse_correlation_results.py
- input_files/Data_test_EAS.csv 0 additions, 4 deletionsinput_files/Data_test_EAS.csv
- input_files/group.txt 1 addition, 1 deletioninput_files/group.txt
- jass_pipeline.nf 110 additions, 341 deletionsjass_pipeline.nf
- modules/Clean_GWAS.nf 43 additions, 0 deletionsmodules/Clean_GWAS.nf
- modules/GW_reference_panels.nf 15 additions, 7 deletionsmodules/GW_reference_panels.nf
- modules/JASS.nf 80 additions, 0 deletionsmodules/JASS.nf
- modules/LDSC.nf 102 additions, 0 deletionsmodules/LDSC.nf
- modules/RAISS_imputation.nf 37 additions, 0 deletionsmodules/RAISS_imputation.nf
- modules/RAISS_sanity_checks.nf 78 additions, 0 deletionsmodules/RAISS_sanity_checks.nf
- modules/run_RAISS_perf.nf 0 additions, 34 deletionsmodules/run_RAISS_perf.nf
- modules/sanity_checks.nf 0 additions, 22 deletionsmodules/sanity_checks.nf
- nextflow_slurm.config 69 additions, 30 deletionsnextflow_slurm.config
- old_versions/jass_pipeline.nf 378 additions, 0 deletionsold_versions/jass_pipeline.nf
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